Ceratopteris chunii and Ceratopteris chingii(Pteridaceae),two new diploid species from China,based on morphological,cytological,and molecular data

Jun-Hao Yu,Rui Zhang,Qiao-Ling Liu,Fa-Guo Wang,Xun-Lin Yu,Xi-Ling Dai,Yong-Bo Liu,Yu-Hong Yan

aEastern China Conservation Centre for Wild Endangered Plant Resources,Shanghai Chenshan Botanical Garden,Shanghai 201602,China

bCollege of Life Science,Shanghai Normal University,Shanghai,200234,China

cShenzhen Key Laboratory for Orchid Conservation and Utilization,National Orchid Conservation Center of China and the Orchid Conservation&Research Center of Shenzhen,Shenzhen,518114,China

dGuangdong Provincial Key Laboratory of Applied Botany,South China Botanical Garden,Chinese Academy of Sciences,Guangzhou,510650,China

eCollege of Forestry,Central South University of Forestry＆Technology,Changsha,Hunan,410004,China

fState Environmental Protection Key Laboratory of Regional Eco-process and Function Assessment,Chinese Research Academy of Environmental Sciences,Beijing,100012,China

Keywords:

Ceratopteris

Phylogeny

Chromosome

Taxonomy

Cryptic species

A B S T R A C T Understanding how natural hybridization and polyploidizations originate in plants requires identifying potential diploid ancestors.However,cryptic plant species are widespread,particularly in Ceratopteris(Pteridaceae).Identifying Ceratopteris cryptic species with different polyploidy levels is a challenge because Ceratopteris spp.exhibit high degrees of phenotypic plasticity.Here,two new cryptic species of Ceratopteris,Ceratopteris chunii and Ceratopteris chingii,are described and illustrated.Phylogenetic analyses reveal that each of the new species form a well-supported clade.C.chunii and C.chingii are similar to Ceratopteris gaudichaudii var.vulgaris and C.pteridoides,respectively,but distinct from their relatives in the stipe,basal pinna of the sterile leaf or subelliptic shape of the fertile leaf,as well as the spore surface.In addition,chromosome studies indicate that C.chunii and C.chingii are both diploid.These,findings will help us further understand the origin of Ceratopteris polyploids in Asia.

1.Introduction

The genus Ceratopteris is an aquatic or subaquatic annual plant,distributed in tropical and subtropical regions worldwide(Brongniart,1821;Lloyd,1974;Masuyama et al.,2002).However,because of the high degree of polymorphism within the genus,several,reproductively,isolated,taxa,are,morphologically indistinguishable(Grant,1981;Paris et al.,1989;Masuyama et al.,2002;Masuyama,2008).This phenomenon strongly suggests that many cryptic species exist in Ceratopteris(Liao et al.,2011;Kinosian et al.,2020a).Consequently,the number of Ceratopteris species around the world remains unknown.

The genus Ceratopteris currently contains over 14 species names(IPNI 2021;Tropicos 2021),of which only four are widely accepted:Ceratopteris cornuta(P.Beauv.)Lepr. Ceratopteris richardii Brongn.,Ceratopteris thalictroides(L.)Brongn.,and Ceratopteris pteridoides(Hook.)Hieron(Brongniart,1821,1823;Leprieur,1830;Hieronymus,1905).C.thalictroides may be a cryptic species complex and the most polymorphic among the four species(Benedict,1909;Lloyd,1974).Masuyama and Watano(2010)demonstrated that C.thalictroides contains at least,five taxa,including Ceratopteris froesii Brade.,C.,thalictroides,C. gaudichaudii var. gaudichaudii Brongn.,C.gaudichaudii var.vulgaris Masuyama&Watano.,and C.oblongiloba Masuyama&Watano(Brongniart,1821;Brade,1964;Masuyama and Watano,2010).Liao et al.(2011)proposed two cryptic species of C.thalictroides(the south type and the north type species)in China.A new cryptic species of Ceratopteris Ceratopteris shingii Y.H.Yan&R.Zhang,has been reported based on strong molecular and morphological evidence(Zhanget al.,2020b).Cytological results suggest that C.cornuta,C.richardii and C.pteridoides are diploids with 2n=78;other Ceratopteris species are tetraploid with 2n=154 or 156(Smith et al.,1977;Hickok,1979;Masuyama and Watano,2005).The speciation of tetraploid Ceratopteris species is more complex than expected because of frequent hybridization.Ceratopteris is known to have cryptic allotetraploid taxa,but one of the diploid parents is likely extinct or has yet to be identified among known diploids(Hickok and Klekowski,1974;Lloyd,1974;Hickok,1977,1979;Adjie et al.,2007;Kinosian et al.,2020b).

From 2017 to 2019,we collected and con firmed living individuals belonging to two species of Ceratopteris.Samples from Guangdong Province were sequenced using RNA-Seq(Shen et al.,2018)and have been reported as diploids,with a chromosome number 2n=78(Zhang et al.,2019).However,the taxonomy of these samples has yet to be revised.Here we identified this specimen as Ceratopteris chunii.Another species collected from the Yangtze River area in central China and previously misidentified as C.pteridoides is here described as Ceratopteris chingii.We also con firm two new undescribed species through morphological observation,palynology,cytological study,and phylogenetic analysis.

2.Material and methods

2.1.Morphological description and scanning electron microscopy(SEM)

Morphological features were described based on specimens measured with Vernier calipers.Micromorphological features were examined under a JSZ6 dissecting microscope(Jiangnan Novel,China)(Tables 1 and 2).

Spores were picked from samples with an insect needle and fixed on a copper platform with conductive adhesive.The goldcoated spores were examined under a Quanta250(FEI,Hillsboro,OR,USA)SEM.We observed 30 spores for each sample.

2.2.Chromosome counting

Root-tips were pretreated with P-dichlorobenzene at room temperature for 3 h and then,fixed in ethanol:glacial acetic acid(3:1 v/v)for 1 h at 4°C.The,fixed root-tips were dissociated in 3% cellulase:2.5% pectinase(1:1 v/v)for 15 min at 25°C,and the chromosomes were stained with carbol fuchsin.,The photomicrographs were imaged on an Axio Scope A1 microscope(Carl Zeiss,Zena,Germany)(Zhang et al.,2019).

2.3.Phylogenetic analysis

Sequences for,five plastid DNA regions(rbcL,rpoC2,rbcL-atpB,trnL(UAA)-trnF(GAA),and trnW(CCA)-trnP(UGG))were used for the phylogenetic analysis according to Masuyama et al.(2002),Wei et al.(2017)and Zhang et al.(2020b).For primers and sequence amplification,we followed protocols described in Masuyama et al.(2002)and Abid et al.(2020).We sampled 25 species of Ceratopteris including the presumed new species.Acrostichum speciosum was chosen for the outgroup based on Zhang et al.(2020b).A list of samples,location information,GenBank accession numbers,and voucher information are provided in Table S1.

Table 1Morphometric data of Ceratopteris chunii and C.gaudichaudii var.vulgaris used for analysis of variance.

Phylogenetic trees were constructed based on maximum parsimony(MP)in MEGA X v.10.0.5(Kumar et al.,2018),maximum likelihood(ML)inIQ-TREEv.1.6.8(Nguyenetal.,2015),and Bayesian inference(BI)in MrBayes v.3.2.6(Ronquist et al.,2012).Each DNA sequence matrix was aligned using MAFFT v.7(Katoh and Standley,2013)with manual adjustments using BioEdit v.4.0.6.2(Hall,1999).

For MP analysis,1000 replicates were performed,with up to 10 tree-bisection-reconnection(TBR)searches per replicate and a maximum of 100 trees held per TBR search.In BI analysis,Model-Finder v.1.6.8(Kalyaanamoorthy et al.,2017)was used to select the best- fit model of nucleotide substitution based on the Bayesian information criterion(BIC).The HKY+F model was selected for the cpDNA data set.Markov Chain Monte Carlo analyses were run for five million generations in BI analysis,with sampling every 500 generations,and the,first 25% discarded as burn-in.We con firmed that the runs had converged by verifying that the average standard deviation of the split frequencies was below 0.01.For ML analysis,ModelFinder v.1.6.8(Kalyaanamoorthy et al.,2017)was used to select the best- fit model of nucleotide substitution based on the BIC.The HKY+F model was selected for the cpDNA data set and 5000 replicates were performed for bootstrap analyses.

In addition to the MP phylogenetic trees,all phylogenetic analyses were performed in PhyloSuite 1.2.1(Zhang et al.,2020a).

3.Results

3.1.Taxonomic treatment

3.1.1.Ceratopteris chunii Y.H.Yan,sp.nov.(Fig.1)

Fig.1.Illustrations of Ceratopteris chunii Y.H.Yan,sp.nov.and C.chingii Y.H.Yan&Jun H.Yu,sp.nov.(A)Blade of sterile leaf of C.chunii;(B)Habit of C.chunii;(C)Spores of C.chunii;(D)Habit of C.chingii;(E)Blade of sterile leaf of C.chingii;(F)Spores of C.chingii.

Type:CHINA,Guangdong,Guangzhou,South China Botanical Garden,the Chinese Academy of Sciences(CAS),23°11′N,113°21′E,elev.9 m,20 August 2017.Yue-Hong Yan Fern09730(holotype:CSH;isotypes:CSH,IBSC and PE).

Table 2Morphometric data of Ceratopteris chingii and C.pteridoides used for analysis of variance.

3.1.1.1.Diagnosis.Morphologically,Ceratopteris chunii and C.gaudichaudii var.vulgaris are similar,however,the sterile leaf of C.chunii has a longer stipe and shorter basal pinna than that of C.gaudichaudii var.vulgaris.

3.1.1.2.Description.Subaquatic,annual,7-27 cm tall,soft and juicy,green when young and brownish when old.Rhizomes:erect,dense cover root.Scales sparse on stipe apex and dense on the base,brown to,hyaline.Leaves:clustered,and,dimorphic.Sterile,leaves:13-23 cm long;stipes 4-11 cm long,0.1-0.3 cmwide at base,green and semicylindrical;laminae 2-4 cm,2-3-pinnate,broadly ovate or ovate-triangular,deeply divided,apex acute,base rounded-cuneate,pinna 1×0.5 cm,alternate,ovate to oblong,base rounded-cuneate.Fertile leaves:8-27 cm long;stipes 4-12 cm long at base,0.1-0.3 cm wide,stipe same as in sterile leaves;laminae 4-10 cm,2-3-pinnate,oblong or ovate-triangular,base rounded-cuneate or rounded-truncate,apex acuminate;entire,terminal segments linear,acute to attenuate;pinna 1×4 cm,alternate,ovate or narrowly triangular.Spores:tetrahedral-globose,120-131μm in diameter,granulate deposits,coarse ridges,and rodlets formed of coalescent particles on the surface.Chromosomes:2n=78,diploid.

Additional Specimens Examined-CHINA.Guangdong Province,Guangzhou City,South China Botanical Garden,CAS,20 August 2017.Yue-Hong Yan Fern09680(CSH);30 June 2020,Fa-Guo Wang YYH15461-YYH15462(PE and IBSC).

Habitat-Ceratopteris chunii is currently only found in Guangdong Province,China,where it grows in ponds,ditches,and rice fields at elevations of 9-21 m(Fig.2A-C).

Fig.2.Habitat of Ceratopteris.(A)Habitat of C.chunii;(B),(C)Young fertile leaf and sterile leaf of C.chunii.(D),(E)Habitat of C.chingii;(F)Young fertile leaf and sterile leaf of C.chingii;(G)Stipe of fertile leaf of C.chingii.

Chinese name-Huan Yong Shui Jue(煥鏞水蕨).

Etymology-In honor of Professor Huan-Yong Chen for his contribution to plant investigations in China and the establishment of South China Botanical Garden,CAS.

Morphological evidence-Morphological comparisons show that the stipe width of the sterile leaf of Ceratopteris chunii and C.gaudichaudii var.vulgaris is similar(P>0.05;Fig.3).However,C.chunii has shorter basal pinnae(P<0.05)and longer stipes(P<0.05).These are important diagnostic characters for separating C.chunii from C.gaudichaudii var.vulgaris.

Fig.3.Analysis of variance of the Ceratopteris morphometric data.(A)C.gaudichaudii var.vulgaris;(B)C.chunii;(C)C.pteridoides;(D)C.chingii.

Spore evidence-The spores of Ceratopteris gaudichaudii var.vulgaris and C.thalictroides are similar.Spores of both have dense granulate deposits and rodlets on the surface(Dettmann and Clifford,1991;Tryon and Lugardon,1991);however,C.chunii spores have comparatively fewer granulate deposits and rodlets(Fig.4A).

Fig.4.Spore morphology of Ceratopteris.(A)C.chunii;(B)C.chingii.

Chromosome evidence-Ceratopteris gaudichaudii var.vulgaris is a tetraploid with 2n=156(Masuyama and Watano,2010),whereas C.chunii is considered diploid with a chromosome number of 2n=78(Fig.S1A).

Phylogenetic evidence-The topologies of the phylogenetic trees from the MP,BI,and ML analyses were mostly identical,with support values shown in Fig.5.The sampled populations of Ceratopteris chunii formed a monophyletic group with strong support(MPBS=91%,MLBS=94%,and BIPP=1),suggesting that C.chunii is an independent lineage from other previously reported Ceratopteris groups.

Fig.5.Bayesian consensus tree of Ceratopteris based on the sequences of rbcL,ropC2,rbcL-atpB,trnL(UAA)-trnF(GAA)and trnW(CCA)-trnP(UGG)intergenic spacer regions.Numbers on the branches are support values(PPBI/BSML/BSMP).Dash(-)indicates nodes with BSMP or BSML<50%.The branch length of the outgroups is shortened as indicated by “//“.

3.1.2.Ceratopteris chingii Y.H.Yan&Jun H.Yu,sp.nov.(Fig.1)

Type:CHINA,Anhui,Chaohu,Chaohu wetland,in some reed marshes,31°38′N,117°44′E,elev.5 m,16 October 2018.Hui Shang SG2911(holotype:CSH;isotypes:CSH,IBSC and PE).

3.1.2.1.Diagnosis.The,morphological,features,of Ceratopteris chingii are similar to those of C.pteridoides except for the shorter stipe and the subelliptic shape of fertile leaf.

3.1.2.2.Description.Subaquatic,annual,10-41cm tall,soft and juicy,green when young and brownish when old.Stipe,rachis,and costa all obviously expanded toward base.Rhizomes: floating or penetrating deep into the mud,branched.Scales sparse on stipe apex,brownish hyaline.Leaves:clustered and dimorphic.Sterile leaves:1-10 cm long;stipes 1-7 cm,0.3-2 cm wide at base;green,smooth,and hemicylindrical;lamina ovate-triangular,2-7 cm,2-pinnate,terminal pinna blunt,lobes triangular to broadly loriform.Fertile leaves:subelliptic,10-33 cm long;stipes 3-12 cm,0.3-3 cm wide at base;stipe same as in sterile leaves;lamina 4-15 cm,3-pinnate,base rounded-cuneate or rounded-truncate,apex acuminate;entire,terminal segments linear,acute to attenuate;pinna 3×6 cm,alternate,ovate or narrowly triangular.Spores:tetrahedral-globose,95-113μm in diameter,smooth,granulate deposits and coarse ridges on sporangium surface.Chromosomes:2n=78,diploid.

Additional Specimens Examined-CHINA.Anhui and Hunan Provinces,Anhui Province Chaohu City,Chaohu wetland,in some reed marshes,16 October 2018.Hui Shang SG2912-SG2920(CSH);Hunan Province,Yueyang City,north of Dongting Lake National Nature Reserve at Caisang Lake,12 October 2017,Xun Lin Yu YYH15457-YYH15458(PE and IBSC).

Habitat-Ceratopteris chingii is currently found in Anhui and Hunan Provinces,China.It usually,floats on the lakes or grows in wetlands,at elevations of 5-30 m(Fig.2D-G).

Chinese name-Cu Geng Shui Jue(粗梗水蕨).

Etymology-In honor of Professor Ren-Chang Ching for his contribution to fern investigations in China and the establishment of Lushan Botanical Garden,CAS.The Chinese name preserves the name widely used in the past.

Morphological evidence-Morphological comparisons show that the stipe width of the fertile leaf of Ceratopteris chingii and C.pteridoides is similar(P>0.05;Fig.3).However,two important diagnostic characters separate C.chingii from C.pteridoides.The relative length of the stipe to blade is smaller in C.chingii(P<0.05),indicating that the stipe is shorter.In addition,the aspect ratio indicates that the fertile leaf of C.chingii is subelliptical rather than triangular(P<0.05).

Spores evidence-Ceratopteris chingii spores are relatively smooth with fewer granulate deposits on the surface(Fig.4B)than those of C.pteridoides(Dettmann and Clifford,1991;Tryon and Lugardon,1991).

Chromosome evidence-Ceratopteris chingii chromosome number is 2n=78(Fig.S1B),and this species was identified as diploid.

Phylogenetic evidence-MP,BI,and ML phylogenetic analyses all showed that Ceratopteris chingii formed a monophyletic clade with support of MPBS=87%,MLBS=95%,and BIPP=1,and was sister to the lineage including C.gaudichaudii var.vulgaris and C.chunii(Fig.5).

4.Discussion

Generally,plants in relatively stable environments(e.g.,aquatic plants)show little morphological variation due to convergent evolution(Schneider and Meyer,2017).Consequently,identifying morphologically cryptic species such as those in Ceratopteris is challenging.Liao et al.(2011)noted that there are two cryptic species within C.thalictroides complex throughout China,which agreed with previous studies(Masuyama et al.,2002).However,only two species(C.thalictroides and C.pteridoides)are recorded in China(Lin and Masuyama,2013).Zhang et al.(2020b)described a new endemic species C.shingii in Hainan,China.In addition,Kinosian et al.(2020a)isolated a novel putative cryptic species from,C.thalictroides,using,restriction-site,associated,DNA sequencing.Multiple lines of evidence indicate that there are many cryptic species in the genus Ceratopteris.Here,C.chunii and C.chingii are recognized as two new cryptic species of Ceratopteris in China.

Our phylogenetic analyses showed that Ceratopteris chunii from Guangdong Province formed a well-support monophyletic group closely related to C.gaudichaudii var.vulgaris(Fig.5).Masuyama and Watano(2010)separated C.gaudichaudii var.vulgaris(type from Japan)from C.gaudichaudii(type from Guam)at the variety level due to their morphological differences,although they have the same rbcL gene sequence and chromosome number(2n=156,tetraploid)(type from Japan).Although morphologically similar to C.gaudichaudii var.vulgaris,C.chunii has a sterile leaf with a longer stipe and shorter basal pinna(Fig.3).SEM showed that C.chunii spores have dense granulate deposits and rodlets on the surface(Fig.4A).Most importantly,C.chunii is diploid(2n=78)(Fig.S1A)rather than tetraploid.Based on these cytological analyses,we recommend that C.chunii be separated from these relatives.C.chingii has long been misidentified as C.pteridoides(type from South America)in China.Our cytological studies showed that C.chingii and C.pteridoides are both diploid with 2n=78(Fig.S1B;Masuyama and Watano,2005).The phylogenetic analyses indicated that C.chingii(type from Anhui and Hunan Provinces)and C.pteridoides were more distantly related;C.chingii formed a well-supported clade with MPBS=87%,MLBS=95%,and BIPP=1(Fig.5).Furthermore,the leaf-shape is nearly triangular,and the stipe of the fertile leaf is longer in C.pteridoides,as recorded by Hieronymus(1905),whereas those of C.chingii are subelliptic and short(Fig.3).Most importantly,the spore surface of C.chingii is relatively smooth with fewer granulate deposits(Fig.4B).Overall,our results indicate that C.chingii is a new cryptic species in China.

The,origin,of,the,tetraploid,complex,of Ceratopteris thalictroides is a mystery,and all cryptic species in C.thalictroides are tetraploid(2n=154,156;Masuyama and Watano,2005).Various hypotheses have been proposed to explore the origin and speciation mechanism of the C.thalictroides complex.Unfortunately,one of the diploid parents is likely extinct or has yet to be identified(Masuyama and Watano,2005;Adjie et al.,2007;Kinosian et al.,2020a).Here,the discovery of C.chunii and C.chingii,two diploid Ceratopteris in Asia,provides a framework for testing hypotheses about the origins of the tetraploid C.thalictroides complex.To unravel the origins of tetraploid Ceratopteris,future work should use nuclear gene sequencing or whole-genome sequencing.

Author contributions

Yue-Hong Yan,Yong-Bo Liu and Rui Zhang designed the experiments.Jun-Hao Yu drafted this paper;Field investigations and data analyses were performed by Jun-Hao Yu,Qiao-Ling Liu,Fa-Guo Wang,Xun-Lin Yu,and Xi-Ling Dai;Yue-Hong Yan,Rui Zhang,and Yongbo Liu revised the manuscript.All authors read and approved the,final manuscript.

Declaration of competing interest

The author declares no conflict of interest.

Acknowledgments

We would like to thank Hui Shang,Yu-FengGu,Li-JunChen and Wen Shao for their assistance in data analyses.The research was funded by the Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment,China(2019HJ2096001006),the Shanghai Municipal Administration of Forestation and City Appearance(grant number G192421),the Biological Resource Programme CAS(ZSZY-001-8),the Strategic Priority Research Program of the Chinese Academy of Sciences(XDA13020603)and the Basic Project of Ministry of Science and Technology of China under Grant(2015FY110200).

Appendix A.Supplementary data

Supplementary data to this article can be found online at https://doi.org/10.1016/j.pld.2021.10.002.